Detalhe da pesquisa
1.
Controlling astrocyte-mediated synaptic pruning signals for schizophrenia drug repurposing with deep graph networks.
PLoS Comput Biol
; 18(5): e1009531, 2022 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35507580
2.
A comparison of deterministic and stochastic approaches for sensitivity analysis in computational systems biology.
Brief Bioinform
; 21(2): 527-540, 2020 03 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-30753281
3.
A robust computational pipeline for model-based and data-driven phenotype clustering.
Bioinformatics
; 37(9): 1269-1277, 2021 06 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-33225350
4.
Multi-omics integration-a comparison of unsupervised clustering methodologies.
Brief Bioinform
; 20(4): 1269-1279, 2019 07 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-29272335
5.
Incorporating extrinsic noise into the stochastic simulation of biochemical reactions: A comparison of approaches.
J Chem Phys
; 148(6): 064111, 2018 Feb 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-29448774
6.
Efficient stochastic simulation of biochemical reactions with noise and delays.
J Chem Phys
; 146(8): 084107, 2017 Feb 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-28249418
7.
SCUDO: a tool for signature-based clustering of expression profiles.
Nucleic Acids Res
; 43(W1): W188-92, 2015 Jul 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25958391
8.
Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations.
PLoS Comput Biol
; 11(10): e1004424, 2015 Oct.
Artigo
em Inglês
| MEDLINE | ID: mdl-26492574
9.
Accelerating rejection-based simulation of biochemical reactions with bounded acceptance probability.
J Chem Phys
; 144(22): 224108, 2016 Jun 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-27305997
10.
Simulation of biochemical reactions with time-dependent rates by the rejection-based algorithm.
J Chem Phys
; 143(5): 054104, 2015 Aug 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-26254639
11.
On the rejection-based algorithm for simulation and analysis of large-scale reaction networks.
J Chem Phys
; 142(24): 244106, 2015 Jun 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-26133409
12.
Efficient rejection-based simulation of biochemical reactions with stochastic noise and delays.
J Chem Phys
; 141(13): 134116, 2014 Oct 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-25296793
13.
Classification of Neisseria meningitidis genomes with a bag-of-words approach and machine learning.
iScience
; 27(3): 109257, 2024 Mar 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-38439962
14.
Computational approaches to understanding nutrient metabolism and metabolic disorders.
Curr Opin Biotechnol
; 70: 7-14, 2021 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-33038781
15.
Early outcome detection for COVID-19 patients.
Sci Rep
; 11(1): 18464, 2021 09 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-34531473
16.
Literature Mining and Mechanistic Graphical Modelling to Improve mRNA Vaccine Platforms.
Front Immunol
; 12: 738388, 2021.
Artigo
em Inglês
| MEDLINE | ID: mdl-34557200
17.
QSPcc reduces bottlenecks in computational model simulations.
Commun Biol
; 4(1): 1022, 2021 09 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-34471226
18.
The Beta Workbench: a computational tool to study the dynamics of biological systems.
Brief Bioinform
; 9(5): 437-49, 2008 Sep.
Artigo
em Inglês
| MEDLINE | ID: mdl-18463130
19.
Calibration of dynamic models of biological systems with KInfer.
Eur Biophys J
; 39(6): 1019-39, 2010 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-19669750
20.
DNA methylation during human adipogenesis and the impact of fructose.
Genes Nutr
; 15(1): 21, 2020 Nov 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-33243154